Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs3200 chr4:6304878 C/T 9.71E-6 115 27.13 42.35 50.07 KM Plot
THYM rs3215836 chr9:134000767 CT/C 0.000118 116 38.83 42.9 12.75 KM Plot
THYM rs3216306 chr11:2726707 CG/C 0 119 39.75 50.07 2.9 KM Plot
THYM rs333177 chr1:22069792 C/G 1.55E-13 119 6 38.17 42.25 KM Plot
THYM rs339305 chr6:117176757 A/C 4.73E-5 118 38.33 50.28 19.03 KM Plot
THYM rs339306 chr6:117176974 A/C 4.73E-5 118 38.33 50.28 19.03 KM Plot
THYM rs339309 chr6:117178329 T/C 4.73E-5 118 38.33 50.28 19.03 KM Plot
THYM rs339310 chr6:117178383 T/G 4.73E-5 118 38.33 50.28 19.03 KM Plot
THYM rs339311 chr6:117178401 A/C 4.73E-5 118 38.33 50.28 19.03 KM Plot
THYM rs339312 chr6:117178688 A/G 4.73E-5 118 38.33 50.28 19.03 KM Plot
THYM rs339314 chr6:117182678 C/T 4.73E-5 118 38.33 50.28 19.03 KM Plot
THYM rs339315 chr6:117183607 T/C 4.73E-5 118 38.33 50.28 19.03 KM Plot
THYM rs339316 chr6:117187178 T/C 4.73E-5 118 38.33 50.28 19.03 KM Plot
THYM rs339318 chr6:117187910 C/T 4.73E-5 119 38.23 50.28 19.03 KM Plot
THYM rs339320 chr6:117191249 G/A 4.73E-5 118 38.33 50.28 19.03 KM Plot